Summarise QC across multiple bgnorm results — qc_summary • bgnormR

Summarise QC across multiple bgnorm results

Usage

qc_summary(results)

Arguments

results: A named list of BgnormResult objects (e.g., one per marker), or a QPTIFFImage returned by bgnorm_pixels (bgnorm results are extracted automatically).

Value

A data.frame with columns name, jsd, and prop_signal (proportion of pixels/cells in the signal component).

Examples

set.seed(2)
mk1 <- bgnorm_cells(c(exp(rnorm(300,log(300),0.5)), exp(rnorm(100,log(2000),0.9))))
mk2 <- bgnorm_cells(c(exp(rnorm(400,log(250),0.4)), exp(rnorm( 80,log(1800),0.8))))
qc_summary(list(CD3 = mk1, CD8 = mk2))
#>   name       jsd prop_signal
#> 1  CD3 0.6863340   0.3158777
#> 2  CD8 0.7329585   0.1790243